PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_3.53
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 375aa    MW: 41377.4 Da    PI: 6.3526
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_3.53genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29126187159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+ed++++eitY+g+H+++
  evm.model.supercontig_3.53 126 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDTTIFEITYRGRHTCN 187
                                 59***************************98999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.779121189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-29123188IPR003657WRKY domain
SuperFamilySSF1182909.02E-26125188IPR003657WRKY domain
SMARTSM007741.2E-41126188IPR003657WRKY domain
PfamPF031061.4E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGDEQKSLID ELTQGRELAR QLQVHINMPS SSPETRDFLV QKILVSYEKS LALLNICSRT  60
GSSAAGNVAG TSESPQSMSA SPRSEDSDRD TLKDQEPRDS SKKRKAMPRW TQQVRITPGT  120
GLEGPLDDGF SWRKYGQKDI LGAKYPRGYY RCTHRNVQGC LATKQVQRSD EDTTIFEITY  180
RGRHTCNPAS SSGAVTPPLQ QPENQEQKPV TDSGEQTTSS HLLPPHHDQR QQHPQQLLLD  240
LRNGLRIITD DLDRIHQPPF SSFNFQTPSN SAMNYEAHYH GLSPASIADN GGFVGNFSPS  300
FISPGTSGSN GYFRTTRTTN EIREANFRNS ESELAELNNF GNSGTNSPTV GLDFPFGNVE  360
LDPNFAFGSP GFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-131261841469WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PRDSSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318373.11e-127hypothetical protein POPTR_0012s01380g
RefseqXP_011001918.11e-126PREDICTED: probable WRKY transcription factor 30
TrEMBLB9I5401e-127B9I540_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01380.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.16e-57WRKY DNA-binding protein 30